W: Could not find sources
invalid resource directory name: /mnt/sdcard/By Yeah apktool4.5/MiuiSystemUI_src/res/values-mediumui
invalid resource directory name: /mnt/sdcard/By Yeah apktool4.5/MiuiSystemUI_src/res/values-largeui
Exception in thread "main" brut.androlib.AndrolibException: brut.androlib.AndrolibException: brut.common.BrutException: could not exec command: [/data/data/per.pqy.apktool/apktool/openjdk/bin/aapt4.4, p, --min-sdk-version, 17, --target-sdk-version, 17, --rename-manifest-package, com.android.systemui, --version-code, 17, --version-name, 4.2.1, -F, /data/data/per.pqy.apktool/APKTOOL29
18297429450
207732.tmp, -0, arsc, -I, /data/data/per.pqy.apktool/1.apk, -I, /data/data/per.pqy.apktool/6.apk, -S, /mnt/sdcard/By Yeah apktool4.5/MiuiSystemUI_src/res, -M, /mnt/sdcard/By Yeah apktool4.5/MiuiSystemUI_src/AndroidManifest.xml]
at brut.androlib.Androlib.buildResourcesFull(Androlib.java:437)
at brut.androlib.Androlib.buildResources(Androlib.java:374)
at brut.androlib.Androlib.build(Androlib.java:277)
at brut.androlib.Androlib.build(Androlib.java:250)
at brut.apktool.Main.cmdBuild(Main.java:225)
at brut.apktool.Main.main(Main.java:84)
Caused by: brut.androlib.AndrolibException: brut.common.BrutException: could not exec command: [/data/data/per.pqy.apktool/apktool/openjdk/bin/aapt4.4, p, --min-sdk-version, 17, --target-sdk-version, 17, --rename-manifest-package, com.android.systemui, --version-code, 17, --version-name, 4.2.1, -F, /data/data/per.pqy.apktool/APKTOOL29
18297429450
207732.tmp, -0, arsc, -I, /data/data/per.pqy.apktool/1.apk, -I, /data/data/per.pqy.apktool/6.apk, -S, /mnt/sdcard/By Yeah apktool4.5/MiuiSystemUI_src/res, -M, /mnt/sdcard/By Yeah apktool4.5/MiuiSystemUI_src/AndroidManifest.xml]
at brut.androlib.res.AndrolibResources.aaptPackage(AndrolibResources.java:488)
at brut.androlib.Androlib.buildResourcesFull(Androlib.java:423)
... 5 more
Caused by: brut.common.BrutException: could not exec command: [/data/data/per.pqy.apktool/apktool/openjdk/bin/aapt4.4, p, --min-sdk-version, 17, --target-sdk-version, 17, --rename-manifest-package, com.android.systemui, --version-code, 17, --version-name, 4.2.1, -F, /data/data/per.pqy.apktool/APKTOOL29
18297429450
207732.tmp, -0, arsc, -I, /data/data/per.pqy.apktool/1.apk, -I, /data/data/per.pqy.apktool/6.apk, -S, /mnt/sdcard/By Yeah apktool4.5/MiuiSystemUI_src/res, -M, /mnt/sdcard/By Yeah apktool4.5/MiuiSystemUI_src/AndroidManifest.xml]
at brut.util.OS.exec(OS.java:89)
at brut.androlib.res.AndrolibResources.aaptPackage(AndrolibResources.java:482)
... 6 more
I: Using Apktool 2.0.0-5d73e2-SNAPSHOT on MiuiSystemUI_src
I: Building resources...
apktool版本5.0

用apktool1.52试试